Supervisory authorities


Our departments

Our partners


Home > Platforms > Bioinformatics


published on , updated on

The proteomics platform posseesses multiple software for analyzing proteomics data. These include the spectra and chromatograms processing software appliances as well as manufacturers’ complex bioinformatics solutions.

The proteomics platfform has:
- DELL Power Edge R920 with 4 processors Intel Xeon E7-4850v2 à 2,3GHz 12 core, 512Go de RAM, 2 disks 1.6 To SSD SATA, 8 disks 1 To Nearline SAS 6 Gbps 7200 Tpm.
- Rack Dell NetShelter SX 24U.
- Mascot Server 2.5 et Mascot Daemon
- Mascot Distiller 2.5
- PEAKS X Bioinformatics Solutions Inc
- Proteome discover 2.2 Thermo Scientific
- LC-Progenesis et Same Spot NonLienar Dynamics
- Byonic
- Proteome Deconvolution 4.0

Free IT solutions are implemented, such as:
- MaxQuant & Perseus = quantification & statistics
- skyline = quantification + statistics
- Cytoscape = biological analysis
- MSConvert
- MSDeconv
- MS Align +, TopPIC

This software is used for protein identification with bottom up strategy, post traductionnal modifications, quantification (with or without labeling), identification of glycosylation or phosphorylation, protein Top Down MSMS analysis.

Developpements bio-inoformatic softwares for proteomic approaches with Olga PLECHAKOVA (IR-U-LIlle) and Marc HAEGELIN (IE-CNRS).